Software

• Using software
  • Software stack
    • Using the module system
  • Setting up the environment using Lmod at the HPC-UGent clusters
    • Quick introduction
    • Module commands: using module (or ml)
    • Lmod vs Tcl-based environment modules
  • Packages with additional documentation
    • MATLAB (a package by MathWorks)
    • R
  • Programming Languages
• Software development
  • Programming paradigms
    • MPI distributed programming
    • OpenMP for shared memory programming
    • Hybrid MPI/OpenMP programs
    • Books about Parallel Computing
  • Development tools
    • Toolchains
    • Intel toolchain
    • FOSS toolchain
    • Intel Trace Analyzer & Collector
    • Eclipse
    • MS Visual Studio
    • ParameterWeaver
    • Version control systems
  • Libraries
    • BLAS and LAPACK
    • Perl package management
    • Python package management
    • R package management
    • Installing R packages with devtools
• Postprocessing tools
  • Visualization software